PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0018.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 176aa    MW: 19895.6 Da    PI: 9.8522
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.63e-174174134
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                         C  C+tt TplWR gp g+++LCnaCG+++rk++
  Kaladp0040s0018.1.p 41 CMECNTTRTPLWRGGPAGPRSLCNACGIRHRKRK 74
                         999*****************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-133575No hitNo description
PROSITE profilePS5011412.3473571IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-133587IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.9E-153975IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.42E-124075No hitNo description
PfamPF003205.2E-154174IPR000679Zinc finger, GATA-type
PROSITE patternPS0034404166IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MCEGSGKLRD VSDSEFPTRN TNSMIMMESS SSSSSQFRRT CMECNTTRTP LWRGGPAGPR  60
SLCNACGIRH RKRKRDHSSL ITTSDDRSKD KKLKYKNKRK SSNDGTGRKG SLSMRLMGLV  120
DGEIRKLREE EEAAILLMAL SYGYGMDLPR VREIHFQSAP IEAYYKEEDD FIKLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17293RKRDHSSLITTSDDRSKDKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FJ109e-29GAT16_ARATH; GATA transcription factor 16
STRINGPOPTR_0014s11940.12e-28(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-18GATA transcription factor 16